A Multi-dimensional Framework for Evaluating Generalization in EEG Foundation Models

Evaluating foundation models under appropriate adaptation settings is essential for understanding the quality and transferability of the learned representations. Recent EEG foundation models have demonstrated promising transfer capabilities across tasks and datasets, motivating their growing use in neurotechnology and clinical applications. However, these models are typically evaluated under full fine-tuning on well-curated downstream datasets, a setting that does not reflect biomedical domain constraints such as limited labeled data, reduced sensor coverage, or parameter-efficient adaptation. In this work, we propose a multi-dimensional evaluation framework for assessing EEG models under realistic low-resource conditions. Empirical analysis of both supervised EEG models and recent EEG foundation models, including LaBraM, CSBrain, and CBraMod, across 6 different datasets is performed under the proposed multi-dimensional evaluation framework. We find that EEG foundation models consistently provide performance gains on long-context tasks such as sleep stage prediction and mental health state classification. In contrast, for short-window Brain Computer Interface style tasks, supervised models achieve comparable despite having substantially fewer parameters. Additional analyses demonstrate that current foundation models provide limited robustness to short-window tasks and channel constrained settings. Together, these findings motivate the use of multi-dimensional evaluation protocols that characterize model behavior under realistic use constraints.

Aperiodic and Low-Frequency Spectral Bias in Reconstruction based EEG Foundation Models

EEG foundation models, pre-trained on large-scale unlabelled EEG data, have emerged as a promising direction towards learning generalizable EEG representations. Despite showing positive results in data-rich regimes, they often fail to outperform significantly smaller supervised models in low-resource settings compared to fully supervised models. We provide a mechanistic account of this shortcoming, attributing it to a fundamental mismatch between reconstruction-based pretext tasks and the idiosyncratic spectral structure of EEG signals, which decompose into distinct high-power aperiodic and low-power oscillatory components. Using controlled, synthetically-generated EEG inputs, we demonstrate that EEG foundation model embeddings are biased to capture the aperiodic components of the EEG signal while under-representing oscillatory components, particularly at higher frequencies. Additionally, linear probe evaluations on real-world BCI datasets further reveal that embeddings encode subject identity more strongly than task-relevant information, thereby reinforcing the low-frequency and aperiodic component bias in foundation model embeddings trained primarily on reconstruction based objectives. Together, these findings elucidate a failure mode in reconstruction based EEG foundation models and motivate future work to incorporate auxiliary losses explicitly targeting high-frequency oscillatory structure as a path toward more capable and generalizable EEG representations.

Affect Decoding in Phonated and Silent Speech Production from Surface EMG

The expression of affect is integral to spoken communication, yet, its link to underlying articulatory execution remains unclear. Measures of articulatory muscle activity such as EMG could reveal how speech production is modulated by emotion alongside acoustic speech analyses. We investigate affect decoding from facial and neck surface electromyography (sEMG) during phonated and silent speech production. For this purpose, we introduce a dataset comprising 2,780 utterances from 12 participants across 3 tasks, on which we evaluate both intra- and inter-subject decoding using a range of features and model embeddings. Our results reveal that EMG representations reliably discriminate frustration with up to 0.845 AUC, and generalize well across articulation modes. Our ablation study further demonstrates that affective signatures are embedded in facial motor activity and persist in the absence of phonation, highlighting the potential of EMG sensing for affect-aware silent speech interfaces.

Encoding Emotion Through Self-Supervised Eye Movement Reconstruction

The relationship between emotional expression and eye movement is well-documented, with literature establishing gaze patterns are reliable indicators of emotion. However, most studies utilize specialized, high-resolution eye-tracking equipment, limiting the potential reach of findings. We investigate how eye movement can be used to predict multimodal markers of emotional expression from naturalistic, low-resolution videos. We utilize a collection of video interviews from the USC Shoah Foundation's Visual History Archive with Holocaust survivors as they recount their experiences in the Auschwitz concentration camp. Inspired by pretraining methods on language models, we develop a novel gaze detection model that uses self-supervised eye movement reconstruction that can effectively leverage unlabeled video. We use this model's encoder embeddings to fine-tune models on two downstream tasks related to emotional expression. The first is aligning eye movement with directional emotion estimates from speech. The second task is using eye gaze as a predictor of three momentary manifestations of emotional behaviors: laughing, crying/sobbing, and sighing. We find our new model is predictive of emotion outcomes and observe a positive correlation between pretraining performance and emotion processing performance for both experiments. We conclude self-supervised eye movement reconstruction is an effective method for encoding the affective signal they carry.

Informed Bootstrap Augmentation Improves EEG Decoding

Electroencephalography (EEG) offers detailed access to neural dynamics but remains constrained by noise and trial-by-trial variability, limiting decoding performance in data-restricted or complex paradigms. Data augmentation is often employed to enhance feature representations, yet conventional uniform averaging overlooks differences in trial informativeness and can degrade representational quality. We introduce a weighted bootstrapping approach that prioritizes more reliable trials to generate higher-quality augmented samples. In a Sentence Evaluation paradigm, weights were computed from relative ERP differences and applied during probabilistic sampling and averaging. Across conditions, weighted bootstrapping improved decoding accuracy relative to unweighted (from 68.35% to 71.25% at best), demonstrating that emphasizing reliable trials strengthens representational quality. The results demonstrate that reliability-based augmentation yields more robust and discriminative EEG representations. The code is publicly available at https://github.com/lyricists/NeuroBootstrap.

Decoding Neural Signatures of Semantic Evaluations in Depression and Suicidality

Depression and suicidality profoundly impact cognition and emotion, yet objective neurophysiological biomarkers remain elusive. We investigated the spatiotemporal neural dynamics underlying affective semantic processing in individuals with varying levels of clinical severity of depression and suicidality using multivariate decoding of electroencephalography (EEG) data. Participants (N=137) completed a sentence evaluation task involving emotionally charged self-referential statements while EEG was recorded. We identified robust, neural signatures of semantic processing, with peak decoding accuracy between 300-600 ms -- a window associated with automatic semantic evaluation and conflict monitoring. Compared to healthy controls, individuals with depression and suicidality showed earlier onset, longer duration, and greater amplitude decoding responses, along with broader cross-temporal generalization and increased activation of frontocentral and parietotemporal components. These findings suggest altered sensitivity and impaired disengagement from emotionally salient content in the clinical groups, advancing our understanding of the neurocognitive basis of mental health and providing a principled basis for developing reliable EEG-based biomarkers of depression and suicidality.

Neural Responses to Affective Sentences Reveal Signatures of Depression

Major Depressive Disorder (MDD) is a highly prevalent mental health condition, and a deeper understanding of its neurocognitive foundations is essential for identifying how core functions such as emotional and self-referential processing are affected. We investigate how depression alters the temporal dynamics of emotional processing by measuring neural responses to self-referential affective sentences using surface electroencephalography (EEG) in healthy and depressed individuals. Our results reveal significant group-level differences in neural activity during sentence viewing, suggesting disrupted integration of emotional and self-referential information in depression. Deep learning model trained on these responses achieves an area under the receiver operating curve (AUC) of 0.707 in distinguishing healthy from depressed participants, and 0.624 in differentiating depressed subgroups with and without suicidal ideation. Spatial ablations highlight anterior electrodes associated with semantic and affective processing as key contributors. These findings suggest stable, stimulus-driven neural signatures of depression that may inform future diagnostic tools.

Articulatory Feature Prediction from Surface EMG during Speech Production

We present a model for predicting articulatory features from surface electromyography (EMG) signals during speech production. The proposed model integrates convolutional layers and a Transformer block, followed by separate predictors for articulatory features. Our approach achieves a high prediction correlation of approximately 0.9 for most articulatory features. Furthermore, we demonstrate that these predicted articulatory features can be decoded into intelligible speech waveforms. To our knowledge, this is the first method to decode speech waveforms from surface EMG via articulatory features, offering a novel approach to EMG-based speech synthesis. Additionally, we analyze the relationship between EMG electrode placement and articulatory feature predictability, providing knowledge-driven insights for optimizing EMG electrode configurations. The source code and decoded speech samples are publicly available.

Deep Learning Characterizes Depression and Suicidal Ideation from Eye Movements

Identifying physiological and behavioral markers for mental health conditions is a longstanding challenge in psychiatry. Depression and suicidal ideation, in particular, lack objective biomarkers, with screening and diagnosis primarily relying on self-reports and clinical interviews. Here, we investigate eye tracking as a potential marker modality for screening purposes. Eye movements are directly modulated by neuronal networks and have been associated with attentional and mood-related patterns; however, their predictive value for depression and suicidality remains unclear. We recorded eye-tracking sequences from 126 young adults as they read and responded to affective sentences, and subsequently developed a deep learning framework to predict their clinical status. The proposed model included separate branches for trials of positive and negative sentiment, and used 2D time-series representations to account for both intra-trial and inter-trial variations. We were able to identify depression and suicidal ideation with an area under the receiver operating curve (AUC) of 0.793 (95% CI: 0.765-0.819) against healthy controls, and suicidality specifically with 0.826 AUC (95% CI: 0.797-0.852). The model also exhibited moderate, yet significant, accuracy in differentiating depressed from suicidal participants, with 0.609 AUC (95% CI 0.571-0.646). Discriminative patterns emerge more strongly when assessing the data relative to response generation than relative to the onset time of the final word of the sentences. The most pronounced effects were observed for negative-sentiment sentences, that are congruent to depressed and suicidal participants. Our findings highlight eye tracking as an objective tool for mental health assessment and underscore the modulatory impact of emotional stimuli on cognitive processes affecting oculomotor control.

Early Detection of Coffee Leaf Rust Through Convolutional Neural Networks Trained on Low-Resolution Images

Coffee leaf rust, a foliar disease caused by the fungus Hemileia vastatrix, poses a major threat to coffee production, especially in Central America. Climate change further aggravates this issue, as it shortens the latency period between initial infection and the emergence of visible symptoms in diseases like leaf rust. Shortened latency periods can lead to more severe plant epidemics and faster spread of diseases. There is, hence, an urgent need for effective disease management strategies. To address these challenges, we explore the potential of deep learning models for enhancing early disease detection. However, deep learning models require extensive processing power and large amounts of data for model training, resources that are typically scarce. To overcome these barriers, we propose a preprocessing technique that involves convolving training images with a high-pass filter to enhance lesion-leaf contrast, significantly improving model efficacy in resource-limited environments. This method and our model demonstrated a strong performance, achieving over 90% across all evaluation metrics--including precision, recall, F1-score, and the Dice coefficient. Our experiments show that this approach outperforms other methods, including two different image preprocessing techniques and using unaltered, full-color images.